PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491201.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 507aa    MW: 57189.9 Da    PI: 7.6895
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491201.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17154203155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_016491201.1 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203
                     78*******************......55************************997 PP

2AP242.71.4e-13247297155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ k +g
  XP_016491201.1 247 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTEVEAARAYDKAAIKCNG 297
                     89********.7******...5...334336**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-15154211IPR016177DNA-binding domain
PfamPF008475.9E-9154203IPR001471AP2/ERF domain
CDDcd000184.13E-11155210No hitNo description
SMARTSM003801.4E-31155217IPR001471AP2/ERF domain
PROSITE profilePS5103217.596155211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-17155211IPR001471AP2/ERF domain
CDDcd000181.24E-25247307No hitNo description
PfamPF008473.4E-9247297IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-17247307IPR016177DNA-binding domain
PROSITE profilePS5103215.685248305IPR001471AP2/ERF domain
SMARTSM003801.7E-32248311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-16248305IPR001471AP2/ERF domain
PRINTSPR003675.9E-6249260IPR001471AP2/ERF domain
PRINTSPR003675.9E-6287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MWNLNDSPHN SRGDESEEGD DEKGKGVGSV SNSSSSAVDN NIEEYVSEEL EEEDNGQKGK  60
KSTNPSKIFG FSMIGPCNDE KLSSESELPV TRQFFPVDEL EIGADDRSSR FPRAHWAGVK  120
FYDSETSGNL PVGKATELSQ PMKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVEADINF NPEDYEDNLK QQMKNLTKEE FVHVLRRQST  240
GFPRGSSKYR GVTLHKCGRW EARMGQLLGK KYVYLGLFDT EVEAARAYDK AAIKCNGKDA  300
VTNFDLSIYE NELNSAECTN YKAADHSLDL SLGGASSKQS SREMEDNNNR DKSSSMQFEV  360
DWRHHGLRPK QQPSPIDVDA RRRDGYNESE TLQLLSQTHL HSPASFKPNN NEMQRFGQYM  420
RAAESQMIQM TFPPHFSSSN YHIQFPSSSN GGRIGATNRR ASDTQQWQSN NIPPPQQLAT  480
AAASSGFPQQ ILRHQNRSQK NTLMRPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491201.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotP479271e-119AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLK4B6T10.0K4B6T1_SOLLC; Uncharacterized protein
STRINGSolyc02g064960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-117AP2 family protein